{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Circle plots\n",
    "============\n",
    "\n",
    "Circle plots arrange nucleotides 5' to 3' around a circle and are a useful\n",
    "visualization for multiple layers of RNA data, especially long RNAs with long\n",
    "primary distance interactions. Sequence annotations, per-nucleotide data,\n",
    "inter-nucleotide data, and secondary structures can be displayed.\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "import rnavigate as rnav\n",
    "from rnavigate.examples import tpp\n",
    "\n",
    "plot = rnav.plot_circle(\n",
    "    samples=[tpp],\n",
    "    sequence=\"ss\",\n",
    "    structure=\"ss\",\n",
    ")\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "help(rnav.plot_circle)"
   ]
  }
 ],
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  "kernelspec": {
   "display_name": "RNAvigate",
   "language": "python",
   "name": "python3"
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   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.9.2"
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