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    "Profile plots\n",
    "=============\n",
    "\n",
    "Profile plots are a useful way to compare multiple sets of per-nucleotide data,\n",
    "similar to [skyline plots](skyline-plots.md). Unlike skyline plots, values are\n",
    "displayed using a color-coded bar graph, like ShapeMapper plots, with sequences\n",
    "and sequence annotations along the x-axis. Unlike ShapeMapper plots, this are\n",
    "more flexible, and color-coding can be defined in the data class."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "import rnavigate as rnav\n",
    "from rnavigate.examples import rnasep_1, rnasep_2\n",
    "\n",
    "plot = rnav.plot_profile(\n",
    "    samples=[rnasep_1, rnasep_2],\n",
    "    profile=\"shapemap\",\n",
    ")\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "help(rnav.plot_profile)\n"
   ]
  }
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