RNAvigate

Getting started

  • Installing RNAvigate
  • Loading data
  • Visualizing data

Plotting options

  • Alignment plots
  • Arc plots
  • Arc compare plots
  • Circle plots
  • Distance distribution histograms
  • Heatmap and contour plots
  • Linear regression plots
  • Interactive 3D molecular renderings
  • Profile plots
  • ShapeMapper2 quality control plots
  • Receiver operator characteristic curves
  • ShapeMapper2 profiles
  • Skyline plots
  • Secondary structure drawings

Analysis options

  • DeltaSHAPE
  • FragMapper

Guides

  • Customizing colors (in prog)
  • Custom interactions
  • Custom profiles
  • Plotting interactions
  • Filtering
  • Transcriptomes

resources

  • Version history
  • Sources of data
  • Data classes
  • Developer installation
  • Glossary
  • Publications
  • Style guide

Full API

  • High-level API
  • rnavigate package
RNAvigate
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© Copyright 2024, Patrick Irving.

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